xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'GTEx'

User can query, download, and visualize of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx'.

Version: 1.1.1
Depends: R (≥ 4.00)
Imports: BiocGenerics, cowplot (≥ 1.1.1), curl (≥ 4.3.2), data.table (≥ 1.14.2), DBI, GenomeInfoDb, GenomicRanges, ggplot2 (≥ 3.3.6), ggrepel, ggridges, httr, IRanges, jsonlite (≥ 1.7.2), PupillometryR, RMySQL, scales, stringr (≥ 1.4.0), SummarizedExperiment (≥ 1.4.0), utils (≥ 4.0.3), viridis
Suggests: coloc, hyprcoloc, knitr, rtracklayer, usethis
Published: 2022-07-14
Author: Ruofan Ding [aut, cre], Xudong Zou [aut, ctb], Yangmei Qin [aut, ctb], Gao Wang [aut, ctb], Lei Li [aut, ctb, cph]
Maintainer: Ruofan Ding <dingruofan1 at foxmail.com>
BugReports: https://github.com/dingruofan/xQTLbiolinks/issues
License: GPL (≥ 3)
URL: https://github.com/dingruofan/xQTLbiolinks
NeedsCompilation: no
Additional_repositories: https://dingruofan.github.io/drat
Materials: README NEWS
CRAN checks: xQTLbiolinks results

Documentation:

Reference manual: xQTLbiolinks.pdf
Vignettes: Colocalization_analysis_with_xQTLbiolinks
Quick_start
eQTL_Specificity
visualization

Downloads:

Package source: xQTLbiolinks_1.1.1.tar.gz
Windows binaries: r-devel: xQTLbiolinks_1.1.1.zip, r-release: xQTLbiolinks_1.1.1.zip, r-oldrel: xQTLbiolinks_1.1.1.zip
macOS binaries: r-release (arm64): xQTLbiolinks_1.1.1.tgz, r-oldrel (arm64): xQTLbiolinks_1.1.1.tgz, r-release (x86_64): xQTLbiolinks_1.1.1.tgz, r-oldrel (x86_64): xQTLbiolinks_1.1.1.tgz
Old sources: xQTLbiolinks archive

Linking:

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