knitr: A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Version: 1.36
Depends: R (≥ 3.2.3)
Imports: evaluate (≥ 0.10), highr, methods, stringr (≥ 0.6), yaml (≥ 2.1.19), xfun (≥ 0.21), tools
Suggests: markdown, formatR, testit, digest, rgl (≥ 0.95.1201), codetools, rmarkdown, htmlwidgets (≥ 0.7), webshot, tikzDevice (≥ 0.10), tinytex, reticulate (≥ 1.4), JuliaCall (≥ 0.11.1), magick, png, jpeg, gifski, xml2 (≥ 1.2.0), httr, DBI (≥ 0.4-1), showtext, tibble, sass, bslib, ragg, styler (≥ 1.2.0), targets (≥ 0.6.0)
Published: 2021-09-29
Author: Yihui Xie ORCID iD [aut, cre], Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto ORCID iD [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin ModrĂ¡k [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky ORCID iD [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb]
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/yihui/knitr/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://yihui.org/knitr/
NeedsCompilation: no
SystemRequirements: Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() require rst2pdf (https://github.com/rst2pdf/rst2pdf).
Citation: knitr citation info
Materials: NEWS
In views: ReproducibleResearch
CRAN checks: knitr results

Documentation:

Reference manual: knitr.pdf
Vignettes: Custom Print Methods
Not an Introduction to knitr
knitr Reference Card
Display Tables with the JavaScript Library DataTables
Templating with knit_expand()
An R HTML Vignette with knitr
An R Markdown Vignette with knitr
R Markdown with the Docco Classic Style
R Markdown with the Docco Linear Style

Downloads:

Package source: knitr_1.36.tar.gz
Windows binaries: r-devel: knitr_1.36.zip, r-release: knitr_1.36.zip, r-oldrel: knitr_1.36.zip
macOS binaries: r-release (arm64): knitr_1.36.tgz, r-release (x86_64): knitr_1.36.tgz, r-oldrel: knitr_1.36.tgz
Old sources: knitr archive

Reverse dependencies:

Reverse depends: basecallQC, BiocSklearn, BoneProfileR, Data2LD, DeMixT, docknitr, EasyHTMLReport, frequency, frequencyConnectedness, Guitar, LabRS, multiverse, NatureSounds, PopGenReport, PSIMEX, qra, ReportingTools, reverseR, rmdHelpers, ROCpAI, rrecsys, spThin, svSweave, tab, tangram, TestGardener, tufterhandout
Reverse imports: abseqR, actel, ADAM, ADAMgui, adea, AdhereRViz, adobeanalyticsr, ADPclust, advclust, ahpsurvey, amanida, AMARETTO, amplican, Anaquin, animint2, apsimx, archetyper, arsenal, assertive, AssetCorr, ASSISTant, attachment, autoharp, automagic, autoMrP, AutoScore, BatchQC, BayesianFROC, BCHM, bcrm, bdchecks, bdclean, beam, behaviorchange, BENMMI, BGVAR, binb, BiocCheck, BiocStyle, BiocWorkflowTools, BioInsight, BioNetStat, blandr, BLCOP, blogdown, bookdown, bookdownplus, boot.heterogeneity, bpcs, brainKCCA, CALANGO, cartools, ccostr, CEMiTool, ceterisParibus, checkdown, cheese, chicane, chronicle, chunkhooks, cleaner, clinDataReview, clinUtils, ClustImpute, codebook, codified, cola, compareGroups, COMPASS, compcodeR, concurve, condformat, condir, confidence, conflr, corrgrapher, corto, cpsurvsim, crsra, cystiSim, dabr, dagirlite, DAPAR, DAPARdata, data.validator, dataCompareR, DataPackageR, dbglm, dccvalidator, DEGreport, dematel, dendroTools, details, did, DiscoRhythm, distill, dlookr, DmelSGI, drhur, DynareR, eat, encryptr, ENMTools, envirem, epifitter, epitab, equatiomatic, erify, esATAC, EviewsR, ezknitr, facerec, factorMerger, Fiscore, FishPhyloMaker, flair, flexdashboard, flextable, flipbookr, flowAI, flowBeads, flowPloidy, flying, FlyingR, forestRK, formattable, funGp, furniture, geckor, genogeographer, getable, gglogo, ggPMX, gistr, gitdown, gm, Gmisc, grapesAgri1, graph4lg, Greg, gretlR, gSEM, gtsummary, GWASinspector, gWQS, HMP16SData, HMP2Data, hoardeR, hR, hrbrthemes, htmlTable, i2dash, iCellR, ideal, iDOVE, igate, iheatmapr, imgrec, inlmisc, IntramiRExploreR, IOHanalyzer, iotables, IRISFGM, ivdesc, jgcricolors, journalabbr, JSmediation, JuliaCall, kableExtra, kfigr, knitLatex, knitrBootstrap, knitrdata, learnr, lemon, lessR, levi, lfmm, liftr, lillies, LineagePulse, linguisticsdown, linl, lintr, lipidomeR, LKT, MACPET, makemyprior, manipulateWidget, marked, MBNMAtime, mdapack, memor, MendelianRandomization, MetaClean, metagam, MetaIntegration, MetaLandSim, metapower, metathis, microbiomeExplorer, microsamplingDesign, midasHLA, mindr, minidown, mitch, MobileTrigger, moderndive, modest, mosaicModel, MQmetrics, multiblock, multisensi, MVNtestchar, MXM, NACHO, NanoStringQCPro, nanotatoR, ncappc, netSEM, neuronorm, nlraa, officedown, OmicInt, omicplotR, opencpu, OpenStats, oppti, optiRum, Orcs, ORION, orloca, oRus, osmose, PAFit, PAMpal, panelvar, pathfindR, PathoStat, patientProfilesVis, pbkrtest, pcaExplorer, phase1PRMD, PhenStat, PheVis, pinp, pipeComp, pixiedust, pkgnet, Platypus, plumbertableau, pointblank, polmineR, polymapR, polyqtlR, POMA, preferably, PreKnitPostHTMLRender, prettyglm, printr, pRoloc, PSF, PTXQC, pysd2r, qcmetrics, qmethod, qPLEXdata, qpNCA, qte, quokar, qwraps2, rADA, radiant.data, radix, RagGrid, rAmCharts, rapbase, rasciidoc, rcarbon, RCAS, rchallenge, RcppFaddeeva, Rd2md, rdtLite, rebook, regioncode, regionReport, regmed, remedy, REPLesentR, reportfactory, reprex, Revticulate, rgl, rim, RITAN, rjdmarkdown, rje, rleafmap, RLumShiny, rmarkdown, rmdformats, rmdpartials, rmdwc, rmsb, rNMF, ROC, rosetta, roxygen2, Rqc, rsf, rsimsum, RSQL, RTCGA, rtemps, rTG, rticles, safetyCharts, SASmarkdown, SBGNview, SBGNview.data, scan, scmeth, scoringRules, scTensor, scTGIF, sdcMicro, sdcTable, SEIRfansy, seminr, SemNetDictionaries, shinydrive, shinyobjects, sjPlot, skimr, sknifedatar, smartDesign, SNSequate, spANOVA, spathial, SpatialEpiApp, spelling, spsur, statgenGxE, statgenSTA, stationery, Statsomat, statsr, statVisual, strm, struct, survMisc, table1, tablerDash, tables, targets, taxa, TCGAbiolinks, tcgaWGBSData.hg19, teachingApps, testcorr, texPreview, text2speech, TGST, thurstonianIRT, tidypredict, tint, TnT, TPP, trelliscopejs, tscR, ttt, tufte, tutorial, twoxtwo, ubiquity, ucbthesis, ufs, umx, UPG, upstartr, vcpen, VDSM, vegtable, vidger, visxhclust, vitae, vote, vtable, warbleR, webexercises, workflowr, wrappedtools, wrProteo, xaringan
Reverse suggests: a4Classif, a4Core, a4Preproc, a4Reporting, aaSEA, ABACUS, ABAData, ABAEnrichment, abbyyR, ABC.RAP, abess, ABHgenotypeR, abmR, abn, abstr, abstractr, academictwitteR, accelerometry, ACE, ace2fastq, acmeR, acnr, act, ActFrag, activatr, ActiveDriverWGS, activityCounts, ActivityIndex, actuaryr, adaptDiag, AdaptGauss, adaptiveGPCA, adaptMT, AdaSampling, add2ggplot, addinsOutline, additive, additivityTests, addScales, adductData, adductomicsR, adegraphics, adepro, adept, adespatial, adfExplorer, AdhereR, ADImpute, adjclust, admix, admixr, admmDensestSubmatrix, ADMMsigma, ADMUR, adnuts, adoptr, adpss, AdvancedBasketballStats, adventr, AeRobiology, afdx, afex, affinity, AffiXcan, affycoretools, afpt, aGE, aggregateBioVar, AGHmatrix, aghq, aglm, agricolaeplotr, agridat, agriwater, AHEnsDbs, AHLRBaseDbs, AHM, AHMeSHDbs, ahMLE, ahnr, AHPathbankDbs, ahptopsis2n, AHPubMedDbs, AHWikipathwaysDbs, AIPW, aire.zmvm, airGR, airGRdatassim, airGRteaching, airpart, airportr, airqualityES, airr, AirSensor, airt, airway, ajv, akc, akmedoids, alakazam, ALDEx2, aldvmm, alevinQC, alfr, alfred, algo, algorithmia, alignfigR, allcontributors, alleHap, AllelicImbalance, allestimates, alluvial, almanac, alookr, alpaca, AlphaBeta, alphabetr, AlphaPart, AlphaSimR, alphavantager, alpine, alpineData, ALPS, AlpsNMR, alsace, altair, amanpg, amapGeocode, AMARETTO, AMCTestmakeR, Amelia, amelie, amen, ammistability, AMModels, AMOUNTAIN, ampir, AMR, amt, AnaCoDa, analogsea, analysisPipelines, analyzer, AncestryMapper, AnchorRegression, ANCOMBC, Andromeda, andurinha, AneuFinder, ANF, AnglerCreelSurveySimulation, anim.plots, animalcules, anipaths, anndata, AnnoProbe, AnnotationBustR, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, ANOM, anomalize, anota2seq, ANOVAreplication, anovir, anscombiser, antaresEditObject, antaresProcessing, antaresRead, antaresViz, AnthropMMD, Anthropometry, anticlust, antitrust, AnVIL, AnVILBilling, AnVILPublish, anyLib, aof, aoos, aopdata, AOV1R, apa, apache.sedona, APAlyzer, apaTables, APAtree, apcf, apcluster, apeglm, apex, apexcharter, aphid, APIS, aplore3, apollo, applicable, apricom, apyramid, AQuadtree, ArchaeoChron, ArchaeoPhases, archeofrag, archivist, archivist.github, arcos, arcpullr, arctools, areal, arena2r, arenar, argoFloats, argonR, argparse, ari, ARIbrain, ariExtra, arkdb, arkhe, armspp, ARPobservation, arrangements, arrayQualityMetrics, arrow, artMS, ARTofR, ARTool, aRxiv, ASAFE, ascii, asciicast, asciiSetupReader, AshkenazimSonChr21, ashr, ASICS, ASICSdata, ASMap, ASpediaFI, aspi, aspline, aSPU, assemblerr, assertable, assertr, AssessORF, AssessORFData, ASSET, ASSIGN, assignPOP, assignR, asteRisk, asus, asymmetry, asymptor, atable, ATACseqQC, atsd, atSNP, attempt, attrib, AUCell, auctestr, auctionr, audiometry, auditor, augmentedRCBD, AugmenterR, auk, aurelius, AUtests, auth0, auto.pca, autocart, AutoDeskR, autoFC, autoimage, automultinomial, autonomics, autoplotly, autostsm, autothresholdr, autoTS, Autotuner, avar, AvInertia, aVirtualTwins, avocado, AWAPer, aweek, aweSOM, AWFisher, aws.alexa, aws.ecx, awst, AzureAuth, AzureCognitive, AzureContainers, AzureCosmosR, AzureGraph, AzureKeyVault, AzureKusto, azuremlsdk, AzureQstor, AzureRMR, AzureStor, AzureTableStor, AzureVision, AzureVM, BaalChIP, babar, babelgene, babette, babsim.hospital, BacArena, backbone, backpipe, backShift, bacon, bacondecomp, badgecreatr, baggr, bain, Ball, ballgown, BALLI, bama, bambu, bamlss, bamp, bamsignals, BANDITS, bang, bannerCommenter, banocc, BANOVA, baRcodeR, barcodetrackR, BARIS, barplot3d, BART, baRulho, BAS, base.rms, base64url, baseballDBR, basedosdados, BaseSet, BASiCS, BasicSTARRseq, basictabler, basilisk, basilisk.utils, BASiNET, basket, BASS, batata, batchelor, BatchGetSymbols, batchtools, BAwiR, bayes4psy, bayesAB, bayesanova, bayesbr, BayesCombo, bayesCT, bayesdfa, bayesDP, BayesESS, BayesFactor, bayesforecast, BayesGOF, bayesian, BayesianNetwork, BayesianPower, BayesianReasoning, BayesianTools, bayesImageS, BayesLN, bayesm, BayesMassBal, bayesmeta, bayesmodels, bayesmove, BayesMRA, bayesnec, bayesplay, bayesplot, bayesPO, Bayesrel, bayesrules, BayesSampling, BayesSpace, BayesSurvival, bayestestR, BayesVarSel, bayfoxr, baymedr, bayNorm, baytrends, bazar, bbmle, bbotk, bbreg, bbricks, bbw, bcaboot, bcc, bcdata, BCEA, BCellMA, Bchron, BClustLonG, bcmaps, bcpa, bcROCsurface, bcSeq, BCSub, bcTSNE, bdl, bdlp, BDMMAcorrect, bdots, BDP2, bdpar, bdrc, bdscale, beachmat, beadarray, BeadDataPackR, beadplexr, BeadSorted.Saliva.EPIC, beakr, beanz, BEARscc, beastier, beautier, BEclear, BED, bedr, beezdemand, behavr, belg, benchmarkfdrData2019, benchmarkme, benthos, berryFunctions, bestNormalize, BESTree, bestridge, betaboost, BetaPASS, BETS, BeviMed, BFpack, bfw, BgeeCall, BgeeDB, BGGM, bggum, bhmbasket, BHMSMAfMRI, BHSBVAR, BHTSpack, bib2df, bibliometrix, biblionetwork, biClassify, biclustermd, BICORN, BiDimRegression, BIEN, bife, BiFET, bifurcatingr, BIGDAWG, BIGL, biglasso, bigleaf, bigMap, bignum, bigPint, bigQueryR, bigstep, billboarder, BinarybalancedCut, BinaryDosage, binman, BinMat, binomialRF, binovisualfields, BinQuasi, BinSegBstrap, BINtools, bio3d, bioacoustics, bioassayR, bioassays, biobroom, biobtreeR, bioC.logs, bioCancer, BiocDockerManager, BiocFileCache, BiocIO, BioCircos, BiocManager, BiocNeighbors, biocompute, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, biocthis, biocViews, biodb, biogas, biogram, biogrowth, Bioi, BioImageDbs, bioimagetools, bioinactivation, biokNN, biomaRt, biomartr, BIOMASS, biomformat, BioMM, BioNERO, bioOED, Biopeak, BioQC, bioRad, bioseq, bioset, biosigner, Biostatistics, biosurvey, biotic, BioTIP, biotmle, biotools, BioVenn, bipartite, bipartiteD3, BiplotML, BIS, biscale, biscuiteer, biscuiteerData, bisect, BisqueRNA, bistablehistory, bit, bitmexr, BivRec, biwavelet, bizdays, bkmrhat, blacksheepr, blaise, BlandAltmanLeh, blapsr, blastula, blima, blin, blink, bliss, BlockCov, blockCV, blocklength, blockRAR, BloodCancerMultiOmics2017, BloodGen3Module, blorr, BLPestimatoR, bluster, bmass, bmggum, bmlm, bmotif, BMRBr, bmrm, BMRSr, bmscstan, bnbc, bnclassify, bndovb, bnem, bnma, bnmonitor, BNPdensity, bnpsd, BNrich, bnspatial, bnstruct, bodenmiller, bodymapRat, BOJ, BoltzMM, boostr, bootf2, bootGOF, bootPLS, bootUR, borrowr, BOSO, BoSSA, BOSSreg, boundingbox, BoutrosLab.plotting.general, box, boxr, bp, bpa, bpbounds, bpnreg, bpp, BPRMeth, bRacatus, brainflowprobes, brainImageRdata, BrainSABER, branchpointer, BRDT, breakDown, breakfast, breakpointR, breakpointRdata, breathtestcore, breathteststan, brendaDb, BRETIGEA, brgedata, BRGenomics, brglm2, brickr, BridgeDbR, bridgedist, bridgesampling, brinton, briskaR, brm, brms, brokenstick, brolgar, broom, broom.helpers, broom.mixed, brotli, BrowserViz, brunnermunzel, bs4cards, bs4Dash, BSBT, bsem, bSims, bslib, bsplus, bsseq, bssm, bst, bsub, BSW, BTYD, BTYDplus, BubbleTree, bubblyr, buffeRs, buildmer, buildr, bulletcp, bumbl, bumblebee, BUMHMM, BumpyMatrix, bunching, bunchr, burnr, BUScorrect, busdater, BUSpaRse, butcher, bvartools, bwsTools, bytescircle, c2c, c3, C50, CAEN, caesar, CAGEfightR, CAGEr, CAISEr, calculus, calendar, calm, calpassapi, campfin, camsRad, caMST, camtrapR, cancensus, CancerInSilico, CancerSubtypes, candisc, canprot, cansim, canvasXpress, cape, capitalR, capl, captioner, captr, car, caracas, caRamel, carbonate, card, Cardinal, CardinalWorkflows, caRecall, careless, caret, caretEnsemble, CARlasso, CARNIVAL, caROC, carpenter, caRpools, CARS, cartograflow, cartography, Cascade, cascsim, casebase, casen, casino, CASMAP, cassandRa, CAST, cat.dt, cat2cat, catalog, CATALYST, catchr, cate, categoryCompare, catenary, cati, catmap, catmaply, catsim, cattonum, causalCmprsk, causaldrf, CausalGPS, CausalImpact, CausalMBSTS, causaloptim, CausalQueries, CausalR, causalsens, causalweight, CB2, cbaf, cbar, CBDA, cBioPortalData, cbpManager, cbsodataR, CCAMLRGIS, ccaPP, ccfindR, ccmap, ccmEstimator, ccoptimalmatch, ccRemover, ccrepe, cdata, CDatanet, cder, cdfquantreg, cdparcoord, CDSeq, celaref, celarefData, celda, CellaRepertorium, cellbaseR, CellBench, celldex, CelliD, cellity, cellmigRation, CellMixS, cellranger, cellscape, CellScore, celltrackR, CellTrails, cellTree, cellWise, CENFA, censcyt, censo2017, Census2016, censusapi, censusr, censusxy, ceRNAnetsim, ceRtainty, ceser, cetcolor, CeTF, CFAcoop, cfda, CGGP, cgmquantify, CGPfunctions, ChainLadder, chameleon, ChAMP, chandwich, ChangePointTaylor, chantrics, charlatan, cheatR, chebpol, checkmate, checkpoint, checkr, chemCal, ChemmineDrugs, ChemmineOB, ChemmineR, chemmodlab, ChemoSpec, ChemoSpec2D, chess, chest, CHETAH, Chicago, childesr, childhoodmortality, chilemapas, chillR, chimeraviz, ChIPanalyser, chipenrich, chipenrich.data, ChIPexoQual, ChIPexoQualExample, chipPCR, ChIPpeakAnno, ChIPseeker, chipseqDBData, chirps, chisq.posthoc.test, chk, chlorpromazineR, CHNOSZ, CHOIRBM, cholera, CholWishart, chorrrds, chromoMap, ChromSCape, chromstaR, chromswitch, chromVAR, chronochrt, CHRONOS, chronosphere, chyper, ciccr, cicero, CIEE, cifti, ciftiTools, CIMICE, cimir, cinaR, CINdex, CINmetrics, CINNA, cinterpolate, cir, circacompare, circle, circlize, circRNAprofiler, circularEV, circumplex, cIRT, CISE, CiteFuse, ciTools, CityWaterBalance, ciuupi, ciuupi2, civis, CJAMP, Ckmeans.1d.dp, CKMRpop, clam, clarifai, ClassifyR, classInt, classmap, cleanerR, cleangeo, cleanNLP, cleanUpdTSeq, cleaver, clere, clhs, cli, clifford, clifro, climaemet, climate, climateStability, climatrends, ClimMobTools, ClimProjDiags, climwin, clinmon, clinspacy, clintools, clipr, cliqueMS, CliquePercolation, CLLmethylation, clock, clonotypeR, cloudml, cloudos, clubSandwich, CluMP, CluMSID, ClussCluster, ClustAssess, clustcurv, Cluster.OBeu, clusteredinterference, clusterExperiment, clusterhap, Clustering, ClusterJudge, clustermole, clustermq, clusternomics, clusterPower, clusterProfiler, ClusterR, ClusterSignificance, ClustGeo, clustifyr, clustifyrdatahub, ClusTorus, clustree, ClustVarLV, clustvarsel, CLVTools, cmapR, cmdfun, cmfrec, cmocean, cmprskcoxmsm, cmR, cms, cmstatr, cmvnorm, CNAIM, cnbdistr, CNEr, cNORM, CNVfilteR, CNVgears, CNViz, CNVPanelizer, CNVRanger, CNVrd2, CNVScope, cobalt, coca, COCOA, cocorresp, coda.base, codalm, CodeDepends, codelink, codemeta, coder, CoDiNA, codingMatrices, codyn, coefplot, coenocliner, coexnet, cofad, coffee, CoFRA, CoGAPS, cogena, cognitoR, CohortPlat, cohorttools, coil, coinmarketcapr, Coinprofile, COINr, cointmonitoR, cointReg, colf, collapse, CollapseLevels, collectArgs, collin, coloc, colocr, colorblindcheck, colorBlindness, colorDF, colordistance, colorednoise, colorhcplot, colorist, colorpatch, colorspace, colorSpec, colourpicker, colourvision, colr, colt, comat, combi, combinedevents, combiroc, coMET, CommonJavaJars, commonsMath, communication, comorbidity, Compack, comparer, compartmap, compEpiTools, comperank, comperes, completejourney, ComplexHeatmap, complexity, complexNet, ComplexUpset, compositions, composits, ComPrAn, comprehenr, compstatr, comsimitv, comtradr, concatipede, conclus, condiments, condTruncMVN, condusco, condvis2, conf, CONFESS, config, configr, confintr, ConformalSmallest, confoundr, confSAM, ConfusionTableR, CongreveLamsdell2016, CoNI, conjurer, conleyreg, connectwidgets, conos, conquestr, consensus, consensusDE, consensusOV, consensusSeekeR, consort, ConsReg, CONSTANd, constellation, conStruct, contact, contactdata, container, contentid, contingency, ContourFunctions, contrast, contribution, contTimeCausal, conumee, convdistr, convergEU, convexjlr, convey, CoopGame, CopernicusDEM, copula, CopulaDTA, CopyNeutralIMA, CopyNumberPlots, coRanking, corazon, Corbi, coRdon, coreCT, CoRegNet, CoreGx, coreheat, corHMM, corncob, CornerstoneR, cornet, coro, coronavirus, CoRpower, corpus, corpustools, corr2D, corral, corrcoverage, CorrectOverloadedPeaks, corregp, correlation, correlationfunnel, corrgram, corrplot, corrr, cort, cosa, coseq, cosinor, cosinor2, COSMIC.67, CoSMoS, cosmosR, cotram, CountClust, countcolors, countdata, countfitteR, Countr, countsimQC, countyfloods, countytimezones, CovCombR, coveffectsplot, covid19.analytics, covid19br, covid19dbcand, covid19italy, covid19sf, covid19swiss, covidcast, covidprobability, covidregionaldata, covidsymptom, covr, covRNA, cowbell, cowplot, cowsay, coxed, coxphw, coxrt, CPBayes, cPCG, cpp11, cppRouting, cpr, cPseudoMaRg, cpsvote, cptec, cqcr, cragg, crandep, cranly, credentials, creditmodel, credule, cregg, cRegulome, CRF, crfsuite, crimedata, crimelinkage, crisprseekplus, CrispRVariants, criticalpath, critpath, crmPack, crochet, crone, cronR, CropDetectR, cropgrowdays, crossmeta, Crossover, crossrun, crosstable, CrossVA, crosswalkr, crplyr, crqa, crso, crtests, crul, crunch, crunchy, cry, csaw, cSEM, CSFA, CSGo, CSIndicators, csodata, cspp, CSSQ, CSTools, csvwr, CTD, CTDquerier, ctf, ctgGEM, ctmcd, ctmle, 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settings, sevenbridges, sevenC, sf, sfarrow, sfcr, sfdct, sfheaders, sfinx, sfnetworks, sfo, SFSI, sftrack, sgat, SGB, sglOptim, sgmcmc, sgmodel, sGMRFmix, SGP, SGPdata, SGSeq, sgstar, shadowtext, shapeNA, SHAPforxgboost, ShapleyValue, shapper, shapr, shar, SharedObject, SharpeR, shazam, SHELF, ShellChron, shiftR, ShiftShareSE, shiny, shiny.i18n, shiny.react, shiny.semantic, shinyaframe, shinyalert, shinyauthr, shinybusy, shinydashboardPlus, shinyEffects, shinyepico, shinyFeedback, shinyglide, ShinyImage, ShinyItemAnalysis, shinyjqui, shinyjs, shinymanager, shinymeta, shinyMethyl, shinyML, shinyMobile, shinyMolBio, shinyNotes, shinyPredict, shinyrecipes, shinyreforms, shinyservicebot, shinySIR, shinystan, shinysurveys, shinyvalidate, ShortForm, shorts, shotGroups, showtext, shrink, shrinkTVP, shutterstock, SI, SIAMCAT, SIBER, sicegar, SICtools, sidrar, siebanxicor, sift, sigFeature, SightabilityModel, sights, sigmaNet, sigminer, sigmoid, SignacX, signatureSearch, signatureSearchData, 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SteppedPower, stepR, steps, stevedata, stevedore, stevemisc, STexampleData, stickr, sticky, stlcsb, stminsights, StMoMo, STMotif, stochvol, stochvolTMB, stockR, stocks, stokes, storr, stoRy, stplanr, stpm, stpp, stR, strand, strandCheckR, stratamatch, Strategy, StrathE2E2, StratifiedMedicine, StratifiedSampling, streamDepletr, strex, strider, stringb, stringfish, stringr, strip, stripless, StructFDR, structree, Structstrings, structToolbox, StructuralVariantAnnotation, stubthat, studyStrap, styler, stylest, SubCellBarCode, subformula, SubgrPlots, subgxe, subscreen, subSeq, subtee, SubtypeDrug, SubVis, suddengains, sudokuAlt, sugarbag, sugrrants, SummarizedBenchmark, SummarizedExperiment, summarytools, SUMMER, Summix, sunburstR, sundialr, SunsVoc, superb, SuperExactTest, SuperGauss, superheat, SuperLearner, superml, SuperpixelImageSegmentation, Superpower, supersigs, suppdata, supreme, sureLDA, surf, SurrogateRegression, surv2sampleComp, survCurve, surveillance, surveybootstrap, surveydata, surveysd, survivalAnalysis, survivalMPLdc, SurvMetrics, survminer, survMS, survParamSim, survPen, survRatio, survRM2, survSNP, survSpearman, survtmle, survtype, survxai, susieR, sValues, svDialogs, svglite, svgtools, svGUI, svMisc, svplots, svSocket, svUnit, svyVGAM, swag, SwarmSVM, SWATH2stats, swdft, sweep, sweidnumbr, swephR, swfdr, swfscAirDAS, swfscDAS, SWIM, SwimmeR, swimplot, switchde, swmmr, SWMPr, sylly, SymbolicDeterminants, symengine, symmetry, symphony, synergyfinder, SynExtend, synfd, synlet, synlik, SynMut, synthACS, synthesis, synthesisr, SynthETIC, SyScSelection, systemfonts, systemicrisk, systemPipeR, systemPipeRdata, systemPipeShiny, systemPipeTools, syuzhet, table.express, table.glue, TableHC, tableHTML, tableMatrix, tableone, tablesgg, tablet, tabnet, tabr, tabshiftr, tabula, TabulaMurisData, tabularaster, tabularmaps, tabulizer, tabulog, tabxplor, tacmagic, tactile, TADCompare, tagcloud, taipan, TANDEM, tangles, tangram.pipe, tapnet, TAPseq, tarchetypes, target, TargetSearch, TargomoR, tartare, tashu, taskscheduleR, tastypie, tatoo, taxadb, taxalight, taxlist, taxonomizr, taylor, TBFmultinomial, tbl2xts, tbm, tbma, tboot, TBRDist, tbrf, TBSignatureProfiler, TCA, tcensReg, TCGAbiolinksGUI, TCGAbiolinksGUI.data, TCGAretriever, TCGAutils, TCGAWorkflowData, TcGSA, TCIApathfinder, TCIU, tcl, Tcomp, tcpl, tcplfit2, tcsinvest, TDAstats, tdaunif, tealeaves, telegram.bot, telemac, tempdisagg, templates, tempoR, Temporal, Tendril, tensorr, tensr, TENxBrainData, TENxBUSData, TENxPBMCData, tenXplore, TENxVisiumData, tergm, Ternary, terrainr, TESS, tesseract, testarguments, testassay, TestDesign, testDriveR, tester, TestFunctions, testthat, testthis, TexExamRandomizer, texmex, texreg, text, text.alignment, text2map, text2sdg, text2vec, textdata, textfeatures, TextForecast, textmineR, TextMiningGUI, textplot, textrank, textrecipes, textreg, textreuse, textshaping, textTinyR, tfaddons, tfarima, TFARM, TFBSTools, tfdatasets, tfdeploy, TFEA.ChIP, tfestimators, TFHAZ, tfhub, tfio, tfprobability, tfruns, TFutils, TGS, TH.data, theiaR, thematic, themetagenomics, thor, ThreeArmedTrials, threeBrain, threesixtygiving, threshr, tibble, tibbletime, tibblify, TiddlyWikiR, tidybayes, tidyBdE, tidybins, tidybulk, tidycat, tidycharts, tidycode, tidycomm, tidyCpp, tidycwl, tidydice, tidyestimate, tidyfst, tidyft, tidygapminder, tidygate, tidygenomics, tidygeocoder, tidygeoRSS, tidyHeatmap, tidyhydat, tidyjson, tidylda, tidylo, tidylog, tidyLPA, tidyMicro, tidymodels, TidyMultiqc, tidymv, tidync, tidyndr, tidypaleo, tidypmc, tidyposterior, tidyquant, tidyqwi, tidyr, tidyREDCap, tidyRSS, tidyrules, tidyselect, tidySEM, tidyseurat, tidySingleCellExperiment, tidysq, tidystats, tidystringdist, tidySummarizedExperiment, tidytable, tidytext, tidytransit, tidytreatment, tidytree, tidyUSDA, tidyverse, tidyvpc, tidywikidatar, tidyxl, tigerstats, tigger, tigris, tikzDevice, tiledb, TileDBArray, tilegramsR, tilemaps, tiler, timechange, timecoursedata, timelineR, timeOmics, timeperiodsR, timeR, TimerQuant, timescape, timeSeq, TimeSeries.OBeu, timeseriesdb, TimeSeriesExperiment, timetk, timevis, TimiRGeN, TIN, tinyarray, tinylabels, tinyscholar, TiPS, TissueEnrich, tissueTreg, TITAN2, titrationCurves, TKCat, tldr, tlm, TLMoments, tLOH, tlsh, tm.plugin.koRpus, tmap, TMExplorer, TMixClust, tmle.npvi, tmod, tmplate, tmt, TNBC.CMS, TNRS, TOAST, tofsims, tofsimsData, togglr, tokenizers, tomoda, tongfen, toOrdinal, topconfects, topdownr, topicdoc, TopKLists, topoDistance, tor, torch, torchaudio, tosca, tosr, TOSTER, totalcensus, tourr, toxEval, ToxicoGx, tpAUC, TPD, Tplyr, TPmsm, TPP2D, tracerer, track2KBA, trackdem, trackdf, trackdown, trackeR, trackr, tracktables, trackter, trackViewer, trade, tradeSeq, traineR, traitdataform, traits, TrajDataMining, trajectories, TrajectoryGeometry, TrajectoryUtils, trajr, tram, tramME, tramnet, transcribeR, transcriptogramer, transcriptR, transfR, transite, transmem, transomics2cytoscape, TransPhylo, transplantr, transx, TraRe, Travel, trawl, treasuryTR, tree.interpreter, TreeAndLeaf, treebase, TreeBUGS, treeDA, treedata.table, treedater, TreeDist, treeducken, treeheatr, treeio, treekoR, treemap, treemapify, treenomial, TreeSearch, TreeSimGM, treespace, treestartr, treestructure, TreeSummarizedExperiment, TreeTools, trekcolors, trelloR, tremendousr, trena, trendchange, trending, Trendy, TriadSim, trialr, triangle, tribe, tricolore, tricycle, TriDimRegression, triebeard, trimmer, trimr, trinROC, trip, triplot, TRMF, tRNA, tRNAdbImport, tRNAscanImport, tRnslate, TRONCO, troopdata, TropFishR, tRophicPosition, truh, TruncatedNormal, trustOptim, tryCatchLog, tsbox, TSCAN, tscopula, TSCS, tsdf, TSE, TSEind, TSEwgt, tsfeatures, tsfgrnn, tsfknn, tsibble, TSMining, tsmp, tsna, TSRchitect, TSrepr, TSstudio, TSTr, tsvr, ttgsea, tTOlr, tuber, tubern, tuckerR.mmgg, tukeytrend, tune, turner, TurtleGraphics, tvem, tvgeom, tvm, tvmediation, tvR, tvReg, TVTB, tvthemes, twang, twangContinuous, twangMediation, twangRDC, twfy, TwitterAutomatedTrading, twoddpcr, TwoRegression, twoway, tximeta, tximport, tximportData, txshift, u5mr, uavRmp, ubms, uchardet, UComp, UCSCXenaShiny, UCSCXenaTools, udpipe, uGMAR, uiucthemes, ukbtools, ukgasapi, UKgrid, uklr, ukpolice, Ularcirc, ulid, umap, UMI4Cats, Umoments, Umpire, uncoverappLib, understandBPMN, UNF, unglue, ungroup, unheadr, unifDAG, unifed, uniformly, unikn, UniProt.ws, Uniquorn, unitedR, unitizer, units, UnitStat, unittest, univariateML, universalmotif, unnest, unpivotr, unrepx, unusualprofile, unvotes, updog, uplifteval, upsetjs, UpSetR, uptasticsearch, urbin, urlshorteneR, urltools, ursa, USAboundaries, usdarnass, usethis, usfertilizer, USgas, USgrid, ushr, usl, usmap, uSORT, utf8, utiml, utr.annotation, V8, vacuum, vaersvax, vagalumeR, valaddin, VALERIE, valhallr, validann, validata, validate, valmetrics, valr, valueEQ5D, valuer, vamc, VancouvR, vanddraabe, vapour, varband, VarBundle, varbvs, varclust, VarCon, VARDetect, VarfromPDB, variancePartition, VariantExperiment, varitas, VARMER, varrank, VarSelLCM, varsExplore, VARshrink, VARsignR, varTestnlme, varycoef, VaSP, vaultr, VBTree, VCA, vccp, VCFArray, vcfR, vcr, vctrs, vcvComp, vdg, VDJgermlines, vdra, vectorwavelet, vegalite, vegan, vegawidget, vegclust, vegdata, vein, velociraptor, vembedr, VennDetail, vennLasso, VERSO, vetr, vfcp, VFP, VFS, VicmapR, VIM, vimp, vimpclust, vinereg, vioplot, vip, viridis, virtualPollen, virtuoso, virustotal, visa, visachartR, viscomplexr, visdat, ViSEAGO, ViSiElse, visit, visNetwork, visR, visreg, vissE, vistime, visTree, vistributions, Visualize.CRAN.Downloads, visualpred, vivid, vivo, vizdraws, vlad, VLTimeCausality, vmr, volcano3D, volleystat, vortexR, vosonSML, voteogram, votesmart, vpc, VplotR, vprr, vrnmf, vroom, vsgoftest, vsn, vtreat, vtree, vtype, VulnToolkit, VWPre, waccR, wacolors, waddR, waiter, wal, walker, wallace, warabandi, warp, washdata, WASP, waspr, waterquality, wavClusteR, wavemulcor, WaveSampling, waydown, wbacon, wbstats, wcde, wCorr, wdman, wdnr.gis, wdpar, weathermetrics, webchem, webglobe, webr, webreadr, webshot, websocket, weco, weibulltools, WeightedCluster, WeightIt, WeightSVM, weitrix, welo, WeMix, wgaim, WgtEff, wheatmap, whereami, whitebox, WhiteStripe, whoa, whSample, widgetframe, widyr, wiesbaden, wiggleplotr, WikidataR, wikilake, wikipediatrend, WikipediR, wikitaxa, wildcard, wildlifeDI, wildviz, wilson, winch, WindCurves, windsoraiR, winfapReader, wiseR, withr, WLasso, womblR, WoodburyMatrix, WoodSimulatR, wooldridge, worcs, wordbankr, wordcloud2, wordpiece, wordpredictor, WordR, wordspace, workflows, workflowsets, workloopR, worldmet, worrms, wosr, wpa, wpm, wppi, wql, WR, wrapr, wrassp, Wrench, wrGraph, WRI, wrMisc, WRS2, wrswoR, WRTDStidal, wrTopDownFrag, wsrf, wsyn, wTO, WufooR, wv, WVPlots, wwntests, wyz.code.metaTesting, wyz.code.offensiveProgramming, wyz.code.rdoc, wyz.code.testthat, xaringanthemer, xbreed, XCIR, xcms, xesreadR, Xeva, xfun, xgb2sql, xgboost, xgxr, XiMpLe, XINA, xlink, xlsimple, xlsx, xlsx2dfs, xml2, xmlr, xmrr, XNAString, xnet, XNomial, xpectr, XPolaris, xpose, XRJulia, xrnet, xROI, xspliner, xtable, xtreg2way, xtune, xutils, xyz, yakmoR, yamlet, yamlme, yamss, yaps, YAPSA, yardstick, yarn, yarrr, yatah, ymlthis, youtubecaption, yowie, YPBP, ypr, yummlyr, zalpha, zeallot, zebrafishRNASeq, zebu, zeitgebr, Zelig, zellkonverter, zenplots, zFPKM, zGPS.AO, ZIBBSeqDiscovery, zinbwave, zipcodeR, zipR, ZipRadius, ZIprop, zlog, zoltr, zonator, zonebuilder, zooaRch, zoolog, zoomGroupStats, zoon, zscorer, ztable, ztpln, zzlite
Reverse enhances: collapsibleTree, htmltools, kimisc, networkD3, patchSynctex, svgPanZoom, threejs

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