CRAN Package Check Results for Package ASMap

Last updated on 2022-01-19 11:53:51 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-4 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-4 22.50 418.84 441.34 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-4 582.76 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-4 665.51 NOTE
r-devel-windows-x86_64-new-UL 1.0-4 53.00 88.00 141.00 OK --no-examples --no-tests --no-vignettes
r-devel-windows-x86_64-new-TK 1.0-4 WARN
r-patched-linux-x86_64 1.0-4 29.47 469.85 499.32 NOTE
r-release-linux-x86_64 1.0-4 NOTE
r-release-macos-arm64 1.0-4 OK
r-release-macos-x86_64 1.0-4 OK
r-release-windows-ix86+x86_64 1.0-4 64.00 141.00 205.00 OK --no-examples --no-tests --no-vignettes
r-oldrel-macos-x86_64 1.0-4 OK
r-oldrel-windows-ix86+x86_64 1.0-4 64.00 138.00 202.00 OK --no-examples --no-tests --no-vignettes

Check Details

Version: 1.0-4
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'MSToutput.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0-4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'asmapvignette.Rnw' using knitr
    Warning in summary.cross(cross) :
     Some markers at the same position on chr 1B1,1D,2B,2D1,3A,3B,3D,4A,5A,5B,5D,6D,7A,7B,7D; use jittermap().
    Warning in summary.cross(cross) :
     Some chromosomes > 1000 cM in length; there may be a problem with the genetic map.
     (Perhaps it is in basepairs?)
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7,L.8,L.9; use jittermap().
    Warning in heatMap(mapBC6, chr = c("L.3", "L.5", "L.8", "L.9"), lmax = 70) :
     Running est.rf.
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7; use jittermap().
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "asmapvignette.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    Error: processing vignette 'asmapvignette.Rnw' failed with diagnostics:
    running 'texi2dvi' on 'asmapvignette.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `tabu.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ignette.tex:68: ==> Fatal error occurred, no output PDF file produced!
    
    --- failed re-building 'asmapvignette.Rnw'
    
    SUMMARY: processing the following file failed:
     'asmapvignette.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK